Thanks everyone for your insight. I think the thing I've learned is that if your not going to finish the attic area and the walls to the finished room are insulated you don't have to insulate the roof joist, but you do need to insulate in between the floor joist and the finished walls.
In our doormer, There are two small doors going into the attic area from a finished dormer area, and the walls that are finished have batting. The floor joist in the attic have old blown fiber glass that has settled, so we need to fluff it up or add to it.. Thanks so much everyone.